1.
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- Confidence Limits on Phylogenies: An Approach Using the Bootstrap
- Joseph Felsenstein
- Evolution, Vol. 39, No. 4 (Jul., 1985), pp. 783-791
- Subjects: Paleontology, Statistics
- Key terms: bootstrap, phylogeny, character, confidence, tree, monophyletic, sampling, jackknife, resampl, efron, parsimoniou, estimate, systematist, parsimony, camin, specie, distribution, infer, consensus, binary, weight
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Cited by 2261
CiteRank: 16
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2.
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- A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
- Stéphane Guindon, Olivier Gascuel
- Systematic Biology, Vol. 52, No. 5 (Oct., 2003), pp. 696-704
- Subjects: Biological Sciences, Botany & Plant Sciences, Statistics
- Key terms: likelihood, branch, felsenstein, mrbaye, tree, algorithm, length, optimization, computing, topological, phylogeny, subtree, taxon, huelsenbeck, sequence, swap, method, parameter, hasegawa, distance, topology
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Cited by 85
CiteRank: 726
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3.
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- Phylogenies and the Comparative Method
- Joseph Felsenstein
- The American Naturalist, Vol. 125, No. 1 (Jan., 1985), pp. 1-15
- Subjects: Ecology & Evolutionary Biology, Paleontology, Statistics
- Key terms: phylogeny, contrast, character, specie, brownian, variance, independent, nonindependence, statistical, parsimony, regression, correlation, likelihood, change, motion, distribution, pair, problem, method, monophyletic, comparative
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Cited by 1331
CiteRank: 137
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4.
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- An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis
- David M. Hillis, James J. Bull
- Systematic Biology, Vol. 42, No. 2 (Jun., 1993), pp. 182-192
- Subjects: Ecology & Evolutionary Biology, Statistics
- Key terms: bootstrap, proportion, repeatability, bootstrapp, phylogenetic, simulation, phylogeny, probability, character, accuracy, strap, correct, rate, change, branch, parsimony, analysis, taxon, estimate, hedge, tree, sample
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Cited by 367
CiteRank: 454
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5.
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- Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology
- John P. Huelsenbeck, Fredrik Ronquist, Rasmus Nielsen, Jonathan P. Bollback
- Science, Vol. 294, No. 5550 (Dec. 14, 2001), pp. 2310-2314
- Subjects: Biological Sciences, General Science, Statistics
- Key terms: bayesian, posterior, phylogeny, substitution, model, phylogenetic, tree, probability, nonsynonymou, inference, predictive, sequence, parsimony, statistic, evolutionary, chain, distribution, site, likelihood, sciencemag, markov, bayes, selection
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Cited by 135
CiteRank: 4479
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6.
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- Model Selection and Model Averaging in Phylogenetics: Advantages of Akaike Information Criterion and Bayesian Approaches over Likelihood Ratio Tests
- David Posada, Thomas R. Buckley
- Systematic Biology, Vol. 53, No. 5 (Oct., 2004), pp. 793-808
- Subjects: Biological Sciences, Statistics
- Key terms: model, parameter, akaike, selection, likelihood, phylogenetics, bayesian, estimate, burnham, phylogenetic, crandall, candidate, huelsenbeck, substitution, weight, raftery, phylogeny, hasegawa, uncertainty, averaging, topology, forster, probability, posterior, inference
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Cited by 69
CiteRank: 9695
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7.
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- The Limits of Amino Acid Sequence Data in Angiosperm Phylogenetic Reconstruction
- Kåre Bremer
- Evolution, Vol. 42, No. 4 (Jul., 1988), pp. 795-803
- Subjects: Botany & Plant Sciences, General Science, Paleontology, Statistics
- Key terms: cladogram, amino, sequence, nucleotide, parsimoniou, phylogenetic, parallelism, step, tree, monophyletic, position, homoplasy, reversal, angiosperm, protein, ferredoxin, family, martin, boult, consensus, fabaceae, matrix, cytochrome, phylogeny
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Cited by 611
CiteRank: 861
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8.
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- Phylogenetic Methods Come of Age: Testing Hypotheses in an Evolutionary Context
- John P. Huelsenbeck, Bruce Rannala
- Science, Vol. 276, No. 5310 (Apr. 11, 1997), pp. 227-232
- Subjects: Ecology & Evolutionary Biology, General Science, Statistics
- Key terms: substitution, gopher, phylogenetic, likelihood, hypothesis, phylogeny, model, transversion, louse, evolutionary, parameter, lineage, felsenstein, tree, statistic, test, parasite, partition, rate, molecular, clock
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Cited by 145
CiteRank: 5937
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9.
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- Phylogeny Estimation and Hypothesis Testing Using Maximum Likelihood
- John P. Huelsenbeck, Keith A. Crandall
- Annual Review of Ecology and Systematics, Vol. 28 (1997), pp. 437-466
- Subjects: Ecology & Evolutionary Biology, General Science, Statistics
- Key terms: likelihood, substitution, model, maximum, phylogenetic, phylogeny, probability, matrix, parameter, estimate, nucleotide, site, hypothesis, observe, change, rate, amino, distribution, sequence, equal
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Cited by 142
CiteRank: 6595
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10.
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- Detecting Correlated Evolution on Phylogenies: A General Method for the Comparative Analysis of Discrete Characters
- Mark Pagel
- Proceedings: Biological Sciences, Vol. 255, No. 1342 (Jan. 22, 1994), pp. 37-45
- Subjects: Ecology & Evolutionary Biology, Statistics
- Key terms: likelihood, phylogeny, branch, parameter, model, correlate, length, change, test, transition, evolution, node, hypothesis, oestrou, character, specie, state, probability, matrix, markov, ancestral
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Cited by 137
CiteRank: 3588
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