As a private citizen after leaving government, Brennan spoke publicly about counterterrorism controversies of the day. He defended the CIA’s rendition of suspected terrorists as “an absolutely vital tool” but described waterboarding as within “the classic definition of torture.” Brennan also criticized the military as moving too far into traditional intelligence spheres.
His career in government appeared to be over until he was invited in late 2007 to join the nascent presidential campaign of Barack Obama. Although Obama and Brennan did not meet until after the election, their first conversation during the transition revealed profound harmony on issues of intelligence and what the president-elect called the “war against al-Qaeda.”
But when Brennan’s name circulated as Obama’s choice to head the CIA, he again came under political fire — this time from liberals who accused him of complicity in the agency’s use of brutal interrogation measures under Bush. Spooked by the criticism, Obama quickly backtracked and Brennan withdrew.
“It has been immaterial to the critics that I have been a strong opponent of many of the policies of the Bush administration such as preemptive war in Iraq and coercive interrogation tactics, to include waterboarding,” he wrote in an angry withdrawal letter released to the media.
Several former intelligence colleagues said that, although Brennan had criticized the CIA interrogation methods after he left the government, they could not recall him doing so as a senior executive at the agency.
Brennan was given responsibility in the White House for counterterrorism and homeland security, a position that required no Senate confirmation and had no well-defined duties. At the outset, colleagues said they wondered what his job would be.
But to a young administration new to the secret details of national security threats and responsibilities, Brennan was a godsend.
And for the man passed over for other posts, it was vindication. “I’ve been crucified by the left and the right, equally so,” and rejected by the Bush administration “because I was not seen as someone who was a team player,” Brennan said in the interview.
“I’m probably not a team player here, either,” he said of the Obama administration. “I tend to do what I think is right. But I find much more comfort, I guess, in the views and values of this president.”
Brennan and others on the inside found that Obama, hailed as a peacemaker by the left and criticized by the right as a naive pacifist, was willing to move far more aggressively than Bush against perceived extremists.
Yemen is a ‘model’
From the outset, Brennan expressed concern about the spread of al-Qaeda beyond South Asia, particularly to Yemen, according to administration officials involved in the early talks.
U.S. counterterrorism policy had long been concentrated on Pakistan, where the Bush administration had launched sporadic CIA drone attacks against senior al-Qaeda and Taliban leaders. Within two years, Obama had more than tripled the number of strikes in Pakistan, from 36 in 2008 to 122 in 2010, according to the New America Foundation.
Eventually, Obama and Brennan decided the program was getting out of hand. High-value targets were becoming elusive, accusations of civilian deaths were rising, and strikes were increasingly directed toward what the angry Pakistanis called mere “foot soldiers.”
But with Pakistan’s adamant refusal to allow U.S. military operations on its soil, taking what was considered a highly successful program out of CIA hands was viewed as counterproductive and too complicated. Although CIA strikes in other countries and military strikes outside Afghanistan require Obama’s approval, the agency has standing permission to attack targets on an approved list in Pakistan without asking the White House.
Although the administration has “wrestled with” the Pakistan program, it was always considered an initiative of the previous administration, a senior official said. In Yemen, the Obama team began to build its own counterterrorism architecture.
The turning point came on Christmas Day in 2009, when a Nigerian trained by Yemen-based al-Qaeda in the Arabian Peninsula, an offshoot of Osama bin Laden’s terrorist group, penetrated post-Sept. 11 defenses and nearly detonated a bomb aboard a Detroit-bound airliner.
In the wake of the failed attack, Brennan “got more into tactical issues,” said Leiter, the former NCTC head. “He dug into more operational stuff than he had before.”
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