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Do Authors Deposit on Time?
Tracking Open Access Policy
Compliance
Drahomira Herrmannova
Nancy Pontika
Petr Knoth
June 4, 2019 – JCDL 2019, Urbana-Champaign, IL
Big Scientific Data and Text Analytics Group
Knowledge Media Institute, The Open University
Introduction
1/22
https://physicstoday.scitation.org/do/10.1
063/PT.6.2.20190418a/full/
JCDL2019 Best Paper
Award
Introduction
• Why we want Open Access (OA)
• Taxpayers should be able to read publicly funded research
• Help researchers at poorer institutions without access to subscriptions
• Institutions suffer from rising journal subscription prices
• Funders introduce policies to encourage OA
• Notable examples:
• U.S. Public Access Plan
• U.S. NIH Public Access Policy
• UK REF 2021 Open Access Policy
• EC H2020 Open Access Policy
2/22
Growing number of OA policies
Source: http://roarmap.eprints.org/
Currently close to 1
thousand funder and
institutional OA policies
3/22
OA policies
• Provide criteria for making papers OA
• Requirements, such as:
• Where should papers be made available (publication or deposit)
• When should papers be deposited
• What version should be deposited (e.g. pre-print vs. post-print)
• Allowed embargo periods
• Etc.
4/22
Research questions
What effect do OA policies have?
5/22
Research questions
• Piwowar et al. (2018): At least 28% of all research papers are
OA
• Lariviere and Sugimoto (2018): More than two thirds of papers
from selected funders (with an OA policy) were OA
• Gargouri et al. (2012): OA growth often due to retroactive self-
archiving (often years after publication)
6/22
Research questions
When do author deposit?
7/22
Research questions
When do author deposit?
Do they deposit in accordance with policies?
6/22
Deposit time lag
• What is deposit time lag?
• The difference between date of publication and date of deposit in a
repository expressed in days
• We study deposit time lag across
• Country
• Time
• Repository
• Discipline
7/22
Data
8/22
Data
8/22
Data
8/22
Data
8/22
Deposit time lag calculation
• Deposit time lag = deposit
date – publication date
• The difference was expressed
in days
• Positive values: article
deposited after publication
• Negative values: article
deposited prior to publication
• Best: as low value as possible
9/22
Dataset
• 2013-2018 publications
• Metadata from Crossref and CORE
Publications 808,984
Repositories 728
Countries 70
Final dataset size Year of publication distribution
10/22
Results: Deposit time lag per country
11/22
Results: Deposit time lag per country/year
• How has deposit time lag changed over time?
• Average deposit time lag per year of publication
?
12/22
Results: Deposit time lag per country/year
• Two options:
1. Use all data
13/22
Results: Deposit time lag per country/year
• Two options:
1. Use all data
2011 2012 2013 2014 2015 2016 2017 2018
Yearly deposits – toy example
2013 publications 2017 publications
13/22
Results: Deposit time lag per country/year
• Two options:
1. Use all data
2011 2012 2013 2014 2015 2016 2017 2018
Yearly deposits – toy example
2013 publications 2017 publications
Data for 2013 publications
13/22
Results: Deposit time lag per country/year
• Two options:
1. Use all data
2011 2012 2013 2014 2015 2016 2017 2018
Yearly deposits – toy example
2013 publications 2017 publications
Data for 2017 publications …?
13/22
Results: Deposit time lag per country/year
• Two options:
1. Use all data
• Underestimates deposit time lag
for all, but especially for newer
publications
2011 2012 2013 2014 2015 2016 2017 2018
Yearly deposits – toy example
2013 publications 2017 publications
13/22
Results: Deposit time lag per country/year
• Two options:
1. Use all data
• Underestimates deposit time lag
for all, but especially for newer
publications
2. Put a maximum limit on
deposit time lag for the
analysis (for comparability)
• E.g. deposit at most a year later
2011 2012 2013 2014 2015 2016 2017 2018
Yearly deposits – toy example
2013 publications 2017 publications
Data for 2013 publications
13/22
Results: Deposit time lag per country/year
• Two options:
1. Use all data
• Underestimates deposit time lag
for all, but especially for newer
publications
2. Put a maximum limit on
deposit time lag for the
analysis (for comparability)
• E.g. deposit at most a year later
2011 2012 2013 2014 2015 2016 2017 2018
Yearly deposits – toy example
2013 publications 2017 publications
Data for 2017 publications
13/22
Results: Deposit time lag per country/year
• Two options:
1. Use all data
• Underestimates deposit time lag
for all, but especially for newer
publications
2. Put a maximum limit on
deposit time lag for the
analysis (for comparability)
• E.g. deposit at most a year later
• Underestimates deposit time lag
for all, but especially for older
publications
2011 2012 2013 2014 2015 2016 2017 2018
Yearly deposits – toy example
2013 publications 2017 publications
13/22
Results: Deposit time lag per year/country
Option 1: All data Option 2: Max deposit time lag limit (1 yr)
14/22
Results: Deposit time lag per subject
Bars are not
stacked, but
overlayed
15/22
REF 2021 OA Policy
• In 2014, the UK introduced an OA Policy for its next research
assessment exercise (REF)
• Requirements
• Deposit final manuscript in an OA repository
• Deposit on publication/acceptance or within 3 months from it
• Papers published since April 2016
• Sanction
• The OA requirement is linked to performance review
• Did the introduction of this mandatory policy affect deposit time lag
in the UK compared to other countries?
16/22
Single vs any repository deposit time lag
1. Single repository deposit time lag
• Deposit time lag with respect to the publications’ deposit date in a given
repository
2. Any repository deposit time lag
• Deposit time lag with respect to the publications’ deposit date in any
repository
Repository 1 Repository 2
05/2017 09/2017
Single repository deposit
time lag for Repository 1 =
05/2017 – publication date
Any repository deposit time
lag for Repository 1 =
min(05/2017, 09/2017) –
publication date
17/22
Results: UK REF compliance per year
Any repository deposit time lag
18/22
Results: Deposit time lag per repository
Full lines: Single repository deposit time lag
Dashed lines: Any repository deposit time lag 19/22
Results: Deposit time lag per year/country
Option 1: All data Option 2: Max deposit time lag limit
2014: UK introduces REF 2021 OA policy 20/22
Discussion
• Study assumption: if metadata deposited, then the full text is also
deposited
• Validation of full text deposits complicated due to the way the OAI-PMH
works
21/22
Discussion
• Study assumption: if metadata deposited, then the full text is also
deposited
• Validation of full text deposits complicated due to the way the OAI-PMH
works
• Our study excludes publications that were never deposited
• To quantify missing deposits we would have to correctly match all CORE
publications to their Crossref metadata
• Focus on deposit time lag rather than the proportion of missing deposits
21/22
Discussion
• Study assumption: if metadata deposited, then the full text is also
deposited
• Validation of full text deposits complicated due to the way the OAI-PMH
works
• Our study excludes publications that were never deposited
• To quantify missing deposits we would have to correctly match all CORE
publications to their Crossref metadata
• Focus on deposit time lag rather than the proportion of missing deposits
• Matching between Crossref and CORE was done using metadata
(titles, authors, publication years)
• Strict approach, results in high accuracy (~95.27%) but lower recall
21/22
Conclusions
• Time between publication and deposit has decreased significantly in
the 2013-2017 period globally
• By 472 days per country on average across all countries in our dataset
22/22
Conclusions
• Time between publication and deposit has decreased significantly in
the 2013-2017 period globally
• By 472 days per country on average across all countries in our dataset
• After introduction of the UK REF 2021 OA Policy this decrease in the
UK has accelerated
• As of early 2018, UK publications are deposited immediately upon
publication or even slightly before
22/22
Conclusions
• Time between publication and deposit has decreased significantly in
the 2013-2017 period globally
• By 472 days per country on average across all countries in our dataset
• After introduction of the UK REF 2021 OA Policy this decrease in the
UK has accelerated
• As of early 2018, UK publications are deposited immediately upon
publication or even slightly before
• Key messages:
• Our observations support the argument for the inclusion of time limited
deposit requirement in OA policies
• Institutional practices an important role in supporting OA policy adoption
22/22
Thank you!
Code: https://github.com/oacore/jcdl_2019
Data: https://doi.org/10.5281/zenodo.2605408

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Do Authors Deposit on Time? Tracking Open Access Policy Compliance

  • 1. Do Authors Deposit on Time? Tracking Open Access Policy Compliance Drahomira Herrmannova Nancy Pontika Petr Knoth June 4, 2019 – JCDL 2019, Urbana-Champaign, IL Big Scientific Data and Text Analytics Group Knowledge Media Institute, The Open University
  • 3. Introduction • Why we want Open Access (OA) • Taxpayers should be able to read publicly funded research • Help researchers at poorer institutions without access to subscriptions • Institutions suffer from rising journal subscription prices • Funders introduce policies to encourage OA • Notable examples: • U.S. Public Access Plan • U.S. NIH Public Access Policy • UK REF 2021 Open Access Policy • EC H2020 Open Access Policy 2/22
  • 4. Growing number of OA policies Source: http://roarmap.eprints.org/ Currently close to 1 thousand funder and institutional OA policies 3/22
  • 5. OA policies • Provide criteria for making papers OA • Requirements, such as: • Where should papers be made available (publication or deposit) • When should papers be deposited • What version should be deposited (e.g. pre-print vs. post-print) • Allowed embargo periods • Etc. 4/22
  • 6. Research questions What effect do OA policies have? 5/22
  • 7. Research questions • Piwowar et al. (2018): At least 28% of all research papers are OA • Lariviere and Sugimoto (2018): More than two thirds of papers from selected funders (with an OA policy) were OA • Gargouri et al. (2012): OA growth often due to retroactive self- archiving (often years after publication) 6/22
  • 8. Research questions When do author deposit? 7/22
  • 9. Research questions When do author deposit? Do they deposit in accordance with policies? 6/22
  • 10. Deposit time lag • What is deposit time lag? • The difference between date of publication and date of deposit in a repository expressed in days • We study deposit time lag across • Country • Time • Repository • Discipline 7/22
  • 15. Deposit time lag calculation • Deposit time lag = deposit date – publication date • The difference was expressed in days • Positive values: article deposited after publication • Negative values: article deposited prior to publication • Best: as low value as possible 9/22
  • 16. Dataset • 2013-2018 publications • Metadata from Crossref and CORE Publications 808,984 Repositories 728 Countries 70 Final dataset size Year of publication distribution 10/22
  • 17. Results: Deposit time lag per country 11/22
  • 18. Results: Deposit time lag per country/year • How has deposit time lag changed over time? • Average deposit time lag per year of publication ? 12/22
  • 19. Results: Deposit time lag per country/year • Two options: 1. Use all data 13/22
  • 20. Results: Deposit time lag per country/year • Two options: 1. Use all data 2011 2012 2013 2014 2015 2016 2017 2018 Yearly deposits – toy example 2013 publications 2017 publications 13/22
  • 21. Results: Deposit time lag per country/year • Two options: 1. Use all data 2011 2012 2013 2014 2015 2016 2017 2018 Yearly deposits – toy example 2013 publications 2017 publications Data for 2013 publications 13/22
  • 22. Results: Deposit time lag per country/year • Two options: 1. Use all data 2011 2012 2013 2014 2015 2016 2017 2018 Yearly deposits – toy example 2013 publications 2017 publications Data for 2017 publications …? 13/22
  • 23. Results: Deposit time lag per country/year • Two options: 1. Use all data • Underestimates deposit time lag for all, but especially for newer publications 2011 2012 2013 2014 2015 2016 2017 2018 Yearly deposits – toy example 2013 publications 2017 publications 13/22
  • 24. Results: Deposit time lag per country/year • Two options: 1. Use all data • Underestimates deposit time lag for all, but especially for newer publications 2. Put a maximum limit on deposit time lag for the analysis (for comparability) • E.g. deposit at most a year later 2011 2012 2013 2014 2015 2016 2017 2018 Yearly deposits – toy example 2013 publications 2017 publications Data for 2013 publications 13/22
  • 25. Results: Deposit time lag per country/year • Two options: 1. Use all data • Underestimates deposit time lag for all, but especially for newer publications 2. Put a maximum limit on deposit time lag for the analysis (for comparability) • E.g. deposit at most a year later 2011 2012 2013 2014 2015 2016 2017 2018 Yearly deposits – toy example 2013 publications 2017 publications Data for 2017 publications 13/22
  • 26. Results: Deposit time lag per country/year • Two options: 1. Use all data • Underestimates deposit time lag for all, but especially for newer publications 2. Put a maximum limit on deposit time lag for the analysis (for comparability) • E.g. deposit at most a year later • Underestimates deposit time lag for all, but especially for older publications 2011 2012 2013 2014 2015 2016 2017 2018 Yearly deposits – toy example 2013 publications 2017 publications 13/22
  • 27. Results: Deposit time lag per year/country Option 1: All data Option 2: Max deposit time lag limit (1 yr) 14/22
  • 28. Results: Deposit time lag per subject Bars are not stacked, but overlayed 15/22
  • 29. REF 2021 OA Policy • In 2014, the UK introduced an OA Policy for its next research assessment exercise (REF) • Requirements • Deposit final manuscript in an OA repository • Deposit on publication/acceptance or within 3 months from it • Papers published since April 2016 • Sanction • The OA requirement is linked to performance review • Did the introduction of this mandatory policy affect deposit time lag in the UK compared to other countries? 16/22
  • 30. Single vs any repository deposit time lag 1. Single repository deposit time lag • Deposit time lag with respect to the publications’ deposit date in a given repository 2. Any repository deposit time lag • Deposit time lag with respect to the publications’ deposit date in any repository Repository 1 Repository 2 05/2017 09/2017 Single repository deposit time lag for Repository 1 = 05/2017 – publication date Any repository deposit time lag for Repository 1 = min(05/2017, 09/2017) – publication date 17/22
  • 31. Results: UK REF compliance per year Any repository deposit time lag 18/22
  • 32. Results: Deposit time lag per repository Full lines: Single repository deposit time lag Dashed lines: Any repository deposit time lag 19/22
  • 33. Results: Deposit time lag per year/country Option 1: All data Option 2: Max deposit time lag limit 2014: UK introduces REF 2021 OA policy 20/22
  • 34. Discussion • Study assumption: if metadata deposited, then the full text is also deposited • Validation of full text deposits complicated due to the way the OAI-PMH works 21/22
  • 35. Discussion • Study assumption: if metadata deposited, then the full text is also deposited • Validation of full text deposits complicated due to the way the OAI-PMH works • Our study excludes publications that were never deposited • To quantify missing deposits we would have to correctly match all CORE publications to their Crossref metadata • Focus on deposit time lag rather than the proportion of missing deposits 21/22
  • 36. Discussion • Study assumption: if metadata deposited, then the full text is also deposited • Validation of full text deposits complicated due to the way the OAI-PMH works • Our study excludes publications that were never deposited • To quantify missing deposits we would have to correctly match all CORE publications to their Crossref metadata • Focus on deposit time lag rather than the proportion of missing deposits • Matching between Crossref and CORE was done using metadata (titles, authors, publication years) • Strict approach, results in high accuracy (~95.27%) but lower recall 21/22
  • 37. Conclusions • Time between publication and deposit has decreased significantly in the 2013-2017 period globally • By 472 days per country on average across all countries in our dataset 22/22
  • 38. Conclusions • Time between publication and deposit has decreased significantly in the 2013-2017 period globally • By 472 days per country on average across all countries in our dataset • After introduction of the UK REF 2021 OA Policy this decrease in the UK has accelerated • As of early 2018, UK publications are deposited immediately upon publication or even slightly before 22/22
  • 39. Conclusions • Time between publication and deposit has decreased significantly in the 2013-2017 period globally • By 472 days per country on average across all countries in our dataset • After introduction of the UK REF 2021 OA Policy this decrease in the UK has accelerated • As of early 2018, UK publications are deposited immediately upon publication or even slightly before • Key messages: • Our observations support the argument for the inclusion of time limited deposit requirement in OA policies • Institutional practices an important role in supporting OA policy adoption 22/22
  • 40. Thank you! Code: https://github.com/oacore/jcdl_2019 Data: https://doi.org/10.5281/zenodo.2605408

Editor's Notes

  1. Many reasons why OA is important and why it is wanted, such as… Many funders starting to introduce policies to encourage OA Many people in the room probably are or have been subject to some OA policies I listed some you might have heard of
  2. Many reasons why OA is important and why it is wanted, such as… Many funders starting to introduce policies to encourage OA Many people in the room probably are or have been subject to some OA policies I listed some you might have heard of
  3. Source: Registry of Open Access Repository Mandates and Policies (ROARMAP) What matters in this figure is that each bar represents how many policies in the database in one quarter Rightmost bar – first quarter of 2019 Currently close to 1 thousand funder and institutional OA policies
  4. Provide criteria Requirements typically include I’ve shown there are many policies and the numbers keep growing
  5. Many people tried to answer this question, for example this study from 2018 has shown that… Researchers require access to recent literature OA is not enough, we need fast OA
  6. Is there evidence to show that if there is a deadline authors deposit sooner?
  7. To answer this question we use something we call deposit time lag We define it as … We study deposit time lag (that’s what I’ll show in this presentation) across…
  8. * Explanation of how the data we need gets created and how we collect it
  9. Negative value – for example if the author deposited a pre-print before review, or the post-print after review but still before publication Best case scenario is if the value is as low as possible, we want zero or negative value so that everybody has early access
  10. There is a drop in 2018 simply because of when we collected the data – we have data until May 2018
  11. Overall deposit time lag for top 5 countries with most publications Each bar = one week Publications at zero were deposited within the same week as they were published – we don’t care when they were published here, just when deposited Significant differences between countries, some have many early deposits, some have many late deposits
  12. We wanted to know how has deposit time lag changed over time, if it’s improving or not We wanted to calculate average deposit time lag per year of publication
  13. To do this we have two options, both have some limitations that I’ll explain because they affect how we can interpret the results First options is to use all data
  14. To explain the limitations I have this mock example – not real data Explain what bars represent To calculate average deposit time lag per year of publication
  15. The problem is that because of where we are right now for 2017 publications we don’t know about these late deposits yet We know about some from 2018, but we don’t know how many will be deposited in the future
  16. This approach still underestimates, because now we’re not including late deposits at all Especially underestimates for older papers because we know from the data late deposits are becoming less common over time Because we are not aware of any better method that would alleviate the limitations of both approaches at the same time, we use these approaches in conjunction
  17. Every point in both figures represents average deposit time lag for papers published in a given year This point tells us papers published in 2013 were deposited on average around 700 days later Numbers on the right lower because if you remember we have removed very late deposits We can see that deposit time lag is decreasing for all countries, especially since 2015-16 Different countries have seen different speed of decrease Looks optimistic, similar pattern in all countries Are there differences in subjects rather than countries?
  18. Compare publications from two years, explain figure We can see that in 2013 average deposit time lag was quite large for all subjects except physics and math All subjects have seen significant decrease Computer science third best in 2017, might be due to depositing pre-prints becoming common practice in recent years, looks like it’s having an effect Key message – differences between subjects are substantial but not dramatic Are the differences elsewhere and can they be driven by policies?
  19. Chose REF 2021 OA policy as a case study because it because it has includes a timeframe for deposit Introduce the policy It requires …
  20. Explain example Any repository deposit time lag – looking at everywhere the paper was deposited, taking the first deposit date and using that to analyse the repository we are looking at We do it this way because once a publication is in an OA repository, it’s already OA, so doing this we want to see if aggregating data from all repositories helps to get access faster
  21. Compliance with the REF OA policy across all UK publications Compliance is increasing
  22. Results per repository, each point on each line is one repository, value represents proportion of publications in that repository that are compliant with the REF OA policy Explain the rest of figure Key message – significant differences between institutions, institutional policies matter (more than subject) “This is not a game of medicine vs physics or mathematics, this is a game of institutional policies and practices.” Some institutions make sure it happens and some don’t, It’s in the hands of institutions
  23. Deposit time lag per country, point out where UK is REF OA policy introduced in 2014, it looks like in 2014 there was some change in behavior and deposit time lag starts decreasing and it has been continuously decreasing since then